Wednesday, January 04, 2012

Trials and Errors: Why Science Is Failing Us

    Wednesday, January 04, 2012   No comments

By Jonah Lehrer
On November 30, 2006, executives at Pfizer—the largest pharmaceutical company in the world—held a meeting with investors at the firm’s research center in Groton, Connecticut. Jeff Kindler, then CEO of Pfizer, began the presentation with an upbeat assessment of the company’s efforts to bring new drugs to market. He cited “exciting approaches” to the treatment of Alzheimer’s disease, fibromyalgia, and arthritis. But that news was just a warm-up. Kindler was most excited about a new drug called torcetrapib, which had recently entered Phase III clinical trials, the last step before filing for FDA approval. He confidently declared that torcetrapib would be “one of the most important compounds of our generation.”

Kindler’s enthusiasm was understandable: The potential market for the drug was enormous. Like Pfizer’s blockbuster medication, Lipitor—the most widely prescribed branded pharmaceutical in America—torcetrapib was designed to tweak the cholesterol pathway. Although cholesterol is an essential component of cellular membranes, high levels of the compound have been consistently associated with heart disease. The accumulation of the pale yellow substance in arterial walls leads to inflammation. Clusters of white blood cells then gather around these “plaques,” which leads to even more inflammation. The end result is a blood vessel clogged with clumps of fat.

Lipitor works by inhibiting an enzyme that plays a key role in the production of cholesterol in the liver. In particular, the drug lowers the level of low-density lipoprotein (LDL), or so-called bad cholesterol. In recent years, however, scientists have begun to focus on a separate part of the cholesterol pathway, the one that produces high-density lipoproteins. One function of HDL is to transport excess LDL back to the liver, where it is broken down. In essence, HDL is a janitor of fat, cleaning up the greasy mess of the modern diet, which is why it’s often referred to as “good cholesterol.”

And this returns us to torcetrapib. It was designed to block a protein that converts HDL cholesterol into its more sinister sibling, LDL. In theory, this would cure our cholesterol problems, creating a surplus of the good stuff and a shortage of the bad. In his presentation, Kindler noted that torcetrapib had the potential to “redefine cardiovascular treatment.”

There was a vast amount of research behind Kindler’s bold proclamations. The cholesterol pathway is one of the best-understood biological feedback systems in the human body. Since 1913, when Russian pathologist Nikolai Anichkov first experimentally linked cholesterol to the buildup of plaque in arteries, scientists have mapped out the metabolism and transport of these compounds in exquisite detail. They’ve documented the interactions of nearly every molecule, the way hydroxymethylglutaryl-coenzyme A reductase catalyzes the production of mevalonate, which gets phosphorylated and condensed before undergoing a sequence of electron shifts until it becomes lanosterol and then, after another 19 chemical reactions, finally morphs into cholesterol. Furthermore, torcetrapib had already undergone a small clinical trial, which showed that the drug could increase HDL and decrease LDL. Kindler told his investors that, by the second half of 2007, Pfizer would begin applying for approval from the FDA. The success of the drug seemed like a sure thing.

And then, just two days later, on December 2, 2006, Pfizer issued a stunning announcement: The torcetrapib Phase III clinical trial was being terminated. Although the compound was supposed to prevent heart disease, it was actually triggering higher rates of chest pain and heart failure and a 60 percent increase in overall mortality. The drug appeared to be killing people.

That week, Pfizer’s value plummeted by $21 billion.


  

Monday, January 02, 2012

Muslims and the Koran

    Monday, January 02, 2012   No comments

In the beginning were the words
Muslims revere the Koran. But its study is not taboo—and is in some quarters increasingly daring

RELIGIONS invite stereotypes, holy texts even more so. Non-Muslims often see Islam as a faith followed by people who hew so closely to an unchanging set of words that they ignore awkward new facts sooner than contradict its message. For critics, this attachment to a text encourages extremists—like Boko Haram, a group that in December attacked Nigerian churches: hotheads can generally find a passage that seems to justify their violence.

Such passages abound in the Koran, just as they do in the founding texts of Christianity, Judaism and many other religions. There is also a long tradition of interpreting such verses in reassuring ways. For example, it is often stressed that the Koran’s injunction to “slay the unbeliever wherever you find him” relates to a specific historical context, in which the first Muslims were betrayed by a pagan group who had signed a truce.

But when it comes to parsing holy writ, there is one big difference between Islam and most other text-based faiths. Barring a brief interlude in the ninth and tenth centuries, and a few modern liberals, Muslims have mostly believed that the Koran is distinct from every other communication. As God’s final revelation to man, it belongs not to earthly, created things but to an eternal realm. That is a bigger claim than other faiths usually make for their holy writings.

The Koran may be interpreted but from a believer’s viewpoint, nothing in it can be set aside. Yet, at least in the calm, superficially courteous world of Western academia, debating the precise text of the Koran is increasingly common—as at a conference hosted by the School of Oriental and African Studies (SOAS), part of the University of London, in November. One organiser was Muhammad Abdel Haleem, an Egyptian-born professor who has translated the Koran into stylish modern English, drawing acclaim from many, but grumbles from purists. Other contributors included a professor from Turkey, and a scholar based in Iran. But most were non-Muslims who study the text as they would any other written material—as prose whose evolution can be traced by comparing versions. New techniques, such as the use of digital photography, help compare variations and solve puzzles. All participants implicitly accepted the idea that methods used to analyse Homer, say, or German myths might elucidate the Koran.

  

Sunday, January 01, 2012

The Optimism Bias

    Sunday, January 01, 2012   No comments

by Tali Sharot

Our brains may be hardwired to look on the bright side, says neuroscientist Tali Sharot in this extract from her new book

We like to think of ourselves as rational creatures. We watch our backs, weigh the odds, pack an umbrella. But both neuroscience and social science suggest that we are more optimistic than realistic. On average, we expect things to turn out better than they wind up being. People hugely underestimate their chances of getting divorced, losing their job or being diagnosed with cancer; expect their children to be extraordinarily gifted; envision themselves achieving more than their peers; and overestimate their likely life span (sometimes by 20 years or more).
The belief that the future will be much better than the past and present is known as the optimism bias. It abides in every race, region and socioeconomic bracket. Schoolchildren playing when-I-grow-up are rampant optimists, but so are grown-ups: a 2005 study found that adults over 60 are just as likely to see the glass half full as young adults.

You might expect optimism to erode under the tide of news about violent conflicts, high unemployment, tornadoes and floods and all the threats and failures that shape human life. Collectively we can grow pessimistic – about the direction of our country or the ability of our leaders to improve education and reduce crime. But private optimism, about our personal future, remains incredibly resilient. A survey conducted in 2007 found that while 70% thought families in general were less successful than in their parents' day, 76% of respondents were optimistic about the future of their own family.

Overly positive assumptions can lead to disastrous miscalculations – make us less likely to get health checkups, apply sunscreen or open a savings account, and more likely to bet the farm on a bad investment. But the bias also protects and inspires us: it keeps us moving forward rather than to the nearest high-rise ledge. Without optimism, our ancestors might never have ventured far from their tribes and we might all be cave dwellers, still huddled together and dreaming of light and heat.

To make progress, we need to be able to imagine alternative realities – better ones – and we need to believe that we can achieve them. Such faith helps motivate us to pursue our goals. Optimists in general work longer hours and tend to earn more. Economists at Duke University found that optimists even save more. And although they are not less likely to divorce, they are more likely to remarry – an act that is, as Samuel Johnson wrote, the triumph of hope over experience.

Even if that better future is often an illusion, optimism has clear benefits in the present. Hope keeps our minds at ease, lowers stress and improves physical health. Researchers studying heart-disease patients found that optimists were more likely than non-optimistic patients to take vitamins, eat low-fat diets and exercise, thereby reducing their overall coronary risk. A study of cancer patients revealed that pessimistic patients under 60 were more likely to die within eight months than non-pessimistic patients of the same initial health, status and age.

In fact, a growing body of scientific evidence points to the conclusion that optimism may be hardwired by evolution into the human brain. The science of optimism, once scorned as an intellectually suspect province of pep rallies and smiley faces, is opening a new window on the workings of human consciousness. What it shows could fuel a revolution in psychology, as the field comes to grips with accumulating evidence that our brains aren't just stamped by the past. They are constantly being shaped by the future.


Friday, December 30, 2011

the man French society loves to mock, Bernard-Henri Lévy, helped vanquish a dictator

    Friday, December 30, 2011   No comments

By Benjamin Wallace-Wells

Celebrity doesn’t always travel well. The conditions it depends upon can be too local, too conditional. Try explaining Kim Kardashian to the Germans; try asking the Germans to explain David Hasselhoff to us. Still, the case of the famously self-regarding, righteous, impeccably coiffed French philosopher and media personality Bernard-Henri Lévy is singularly strange. The events of the past year—in which Lévy, operating freelance, seemed to prompt a broke and crumbling Europe into a humanitarian war in Libya—so obviously belong to a different era that Lévy has left in his wake a torrent of historical analogies: Perhaps he is Lawrence of Arabia, as a friendly French review recently suggested. Or perhaps he is Don Quixote.

One year ago, influence like this appeared far beyond Lévy’s reach. He has long been France’s most famous living philosopher, and was once an important one, but his media and social profile eclipsed his intellectual reputation. He was still suffering from the highly embarrassing Botul episode of 2010, in which Lévy had happened upon a philosophical spoof and, assuming it to be serious, cited its arguments as part of a critique of Immanuel Kant. (He had missed the crucial clue, which was that the fake philosopher, Jean-Baptiste Botul, was elaborating a philosophy called Botulism.) His journalism was often called glib, and his big 2006 book on America had been panned on the front page of the New York Times’ Sunday book review. When I called scholars of European ideas at Harvard and Columbia to talk about Lévy, they dismissed him as overhyped and irrelevant, respectively. At the beginning of 2011, Lévy was most frequently in the French press for his New York mistress, the heiress Daphne Guinness, who kept up a public theater of pining for him on Twitter.

But, as Lévy told me recently, “sometimes you are inhabited by intuitions that are not clear to you.” On February 23, the philosopher was in Cairo watching television images of Muammar Qaddafi’s retribution against the rebel towns around Benghazi, which the dictator and his sons had threatened to drown in “rivers of blood.” Lévy is most fully himself in stark humanitarian crises, when defending what he calls “the memory of the worst.” He is also the heir to a vast timber fortune, wealth that allows him a license to act on his instincts, and so he promptly found the name of rebel leader Mustafa Abdel-Jalil, arranged for a cameraman and for a private plane to fly him near the front, and within a few hours was in a hired car, driving off to war.

Lévy was a veteran of mass killing; he had seen it in a half-dozen conflicts, maybe, and driving through the desert towns east of Benghazi, he detected its early signs: blood-smeared walls, passersby wrapping themselves in hoods to keep their lungs free of contaminants. He foresaw a “crawling tragedy. Thirty, 40 dead a day. Maybe worse.” In Benghazi, Lévy spent the hour before their meeting frantically Googling Abdel-Jalil and leaping up to greet anyone walking past who might be the Libyan. When Abdel-Jalil did arrive (“short with a modest smile and the look of a stunned falcon”), Lévy had prepared his speech. “The world is watching,” he began. It was pompous, he realized, but “you have to say something.” He compared Benghazi to the Warsaw Ghetto, to Sarajevo. “Benghazi is the capital not only of Libya but of free men and women all over the world,” Lévy told the rebel leader


Questioning the Arab League's Syrian Monitors

    Friday, December 30, 2011   No comments

by CONNOR SIMPSON
Violence continued in Syria on Thursday despite the arrival of the Arab League's monitors, and now the appointed leader of the monitors is being called into question over his own spotty human rights record. Sudan's General Mustafa al-Dabi is the leader of the 100 or so Arab League monitors in Syria right now. Al-Dabi has been accused of committing war crimes in Darfur in the 1990s. From this report in the Guardian, Amnesty International has spoken out against al-Dabi's participation, saying, "The Arab League's decision to appoint as the head of the observer mission a Sudanese general on whose watch severe human rights violations were committed in Sudan risks undermining the League's efforts so far and seriously calls into question the mission's credibility." 

Most of the controversy came after comments al-Dabi reportedly made after a recent visit to the "restive" city of Homs. Al-Dabi was quoted as saying the situation there is "reassuring," when there have been reports of protests and violence coming from the city. "Some places looked a bit of a mess but there was nothing frightening," he said, according to the BBC. Some were discouraged by his comments, but Russia, Syria's most high-profile ally, came out in support of al-Dabi's statements. The Russian government gave a statement on their website, and quoted by Reuters, saying, "Judging by the public statements made by the chief of the mission (Sudanese general Mustafa) al-Dabi, who in the first of his visits went to the city of Homs ... the situation seems to be reassuring."


Thursday, December 29, 2011

Guess the name of the country

    Thursday, December 29, 2011   No comments


Israeli
 Girl, 8, at Center of Tension Over Religious Extremism
By ISABEL KERSHNER
BEIT SHEMESH, Israel — The latest battleground in .            Israel’s struggle over religious extremism covers little more than a square mile of this Jewish city situated between Jerusalem and Tel Aviv, and it has the unexpected public face of a blond, bespectacled second-grade girl.

She is Naama Margolese, 8, the daughter of American immigrants who are observant modern Orthodox Jews. An Israeli weekend television program told the story of how Naama had become terrified of walking to her elementary school here after ultra-Orthodox men spit on her, insulted her and called her a prostitute because her modest dress did not adhere exactly to their more rigorous dress code.
The country was outraged. Naama’s picture has appeared on the front pages of all the major Israeli newspapers. While Prime Minister Benjamin Netanyahu insisted Sunday that “Israel is a democratic, Western, liberal state” and pledged that “the public sphere in Israel will be open and safe for all,” there have been days of confrontation at focal points of friction here.
Ultra-Orthodox men and boys from the most stringent sects have hurled rocks and eggs at the police and journalists, shouting “Nazis” at the security forces and assailing female reporters with epithets like “shikse,” a derogatory Yiddish term for a non-Jewish woman or girl, and “whore.” Jews of varying degrees of orthodoxy and secularity headed to Beit Shemesh on Tuesday evening to join local residents in a protest numbering in the thousands against religious violence and fanaticism.

For many Israelis, this is not a fight over one little girl’s walk to school. It is a struggle that could shape the future character and soul of the country, against ultra-Orthodox zealots who have been increasingly encroaching on the public sphere with their strict interpretation of modesty rules, enforcing gender segregation and the exclusion of women.
The battle has broadened and grown increasingly visible in recent weeks and months. Orthodox male soldiers walked out of a ceremony where female soldiers were singing, adhering to what they consider to be a religious prohibition against hearing a woman’s voice; women have been challenging the seating arrangements on strictly “kosher” buses serving ultra-Orthodox neighborhoods and some inter-city routes, where female passengers are expected to sit at the back…

 Now, don't cheat (don't mind this if you had read the story already); and guess, about what country and which religion is this article reporting? You may record your answer in the comment line, then continue reading the original article here.

Wednesday, December 28, 2011

Why the Arabic World Turned Away from Science

    Wednesday, December 28, 2011   No comments

by Hillel Ofek

Contemporary Islam is not known for its engagement in the modern scientific project. But it is heir to a legendary “Golden Age” of Arabic science frequently invoked by commentators hoping to make Muslims and Westerners more respectful and understanding of each other. President Obama, for instance, in his June 4, 2009 speech in Cairo, praised Muslims for their historical scientific and intellectual contributions to civilization:

It was Islam that carried the light of learning through so many centuries, paving the way for Europe’s Renaissance and Enlightenment. It was innovation in Muslim communities that developed the order of algebra; our magnetic compass and tools of navigation; our mastery of pens and printing; our understanding of how disease spreads and how it can be healed.

Such tributes to the Arab world’s era of scientific achievement are generally made in service of a broader political point, as they usually precede discussion of the region’s contemporary problems. They serve as an implicit exhortation: the great age of Arab science demonstrates that there is no categorical or congenital barrier to tolerance, cosmopolitanism, and advancement in the Islamic Middle East.

To anyone familiar with this Golden Age, roughly spanning the eighth through the thirteenth centuries a.d., the disparity between the intellectual achievements of the Middle East then and now — particularly relative to the rest of the world — is staggering indeed. In his 2002 book What Went Wrong?, historian Bernard Lewis notes that “for many centuries the world of Islam was in the forefront of human civilization and achievement.” “Nothing in Europe,” notes Jamil Ragep, a professor of the history of science at the University of Oklahoma, “could hold a candle to what was going on in the Islamic world until about 1600.” Algebra, algorithm, alchemy, alcohol, alkali, nadir, zenith, coffee, and lemon: these words all derive from Arabic, reflecting Islam’s contribution to the West.

Today, however, the spirit of science in the Muslim world is as dry as the desert. Pakistani physicist Pervez Amirali Hoodbhoy laid out the grim statistics in a 2007 Physics Today article: Muslim countries have nine scientists, engineers, and technicians per thousand people, compared with a world average of forty-one. In these nations, there are approximately 1,800 universities, but only 312 of those universities have scholars who have published journal articles. Of the fifty most-published of these universities, twenty-six are in Turkey, nine are in Iran, three each are in Malaysia and Egypt, Pakistan has two, and Uganda, the U.A.E., Saudi Arabia, Lebanon, Kuwait, Jordan, and Azerbaijan each have one.

There are roughly 1.6 billion Muslims in the world, but only two scientists from Muslim countries have won Nobel Prizes in science (one for physics in 1979, the other for chemistry in 1999). Forty-six Muslim countries combined contribute just 1 percent of the world’s scientific literature; Spain and India each contribute more of the world’s scientific literature than those countries taken together. In fact, although Spain is hardly an intellectual superpower, it translates more books in a single year than the entire Arab world has in the past thousand years. “Though there are talented scientists of Muslim origin working productively in the West,” Nobel laureate physicist Steven Weinberg has observed, “for forty years I have not seen a single paper by a physicist or astronomer working in a Muslim country that was worth reading.”

Comparative metrics on the Arab world tell the same story. Arabs comprise 5 percent of the world’s population, but publish just 1.1 percent of its books, according to the U.N.’s 2003 Arab Human Development Report. Between 1980 and 2000, Korea granted 16,328 patents, while nine Arab countries, including Egypt, Saudi Arabia, and the U.A.E., granted a combined total of only 370, many of them registered by foreigners. A study in 1989 found that in one year, the United States published 10,481 scientific papers that were frequently cited, while the entire Arab world published only four. This may sound like the punch line of a bad joke, but when Nature magazine published a sketch of science in the Arab world in 2002, its reporter identified just three scientific areas in which Islamic countries excel: desalination, falconry, and camel reproduction. The recent push to establish new research and science institutions in the Arab world — described in these pages by Waleed Al-Shobakky (see “Petrodollar Science,” Fall 2008) — clearly still has a long way to go.

Given that Arabic science was the most advanced in the world up until about the thirteenth century, it is tempting to ask what went wrong — why it is that modern science did not arise from Baghdad or Cairo or Córdoba. We will turn to this question later, but it is important to keep in mind that the decline of scientific activity is the rule, not the exception, of civilizations. While it is commonplace to assume that the scientific revolution and the progress of technology were inevitable, in fact the West is the single sustained success story out of many civilizations with periods of scientific flourishing. Like the Muslims, the ancient Chinese and Indian civilizations, both of which were at one time far more advanced than the West, did not produce the scientific revolution.

Nevertheless, while the decline of Arabic civilization is not exceptional, the reasons for it offer insights into the history and nature of Islam and its relationship with modernity. Islam’s decline as an intellectual and political force was gradual but pronounced: while the Golden Age was extraordinarily productive, with the contributions made by Arabic thinkers often original and groundbreaking, the past seven hundred years tell a very different story.


Tuesday, December 27, 2011

Aftermath Of 2011 Duma Elections: Moving To Russia 2.0

    Tuesday, December 27, 2011   No comments

By Philippe Conde

The parliamentary elections that took place in Russia on 4 December 2011 usher in a new era for the post-Soviet political system in the country. The poor results registered by the Kremlin’s party, United Russia – amid allegations of wide- spread vote-rigging – show that its decade-long domination is over. United Russia got only 49.3% of the votes, which is far behind the 64.1% the party obtained in 2007. This situation makes the next Duma more open for debate and the next March presidential elections more competitive. Despite the loss of the constitutional two-thirds majority (315 seats out of 450 in 2007), United Russia won 238 seats, meaning that it still holds the majority necessary to pass laws alone.

Three other parties made their way into the Lower House: the Communist party came in sec- ond with 19.2% (up from 11.6%) and 92 seats, A Just Russia gathered 13.25% (up from 7.7%) and 64 seats, and the far-right Liberal Democratic Party, or LDPR, got 12% (up from 8.1%) and 56 seats. These results reflect a better picture of the balance of political forces in the country than the former Duma, but the elections took place in a tense atmosphere.

In the run-up to the election, opposition activists were rounded up by police or detained in Moscow.1 During the elections a wide array of traditional manipulations were used such as ballot box stuffing or pressure on civil servants to vote. Similar to former elections, regional leaders were ordered to return high votes in favor of the incumbent ruling party.2 Thus, Soviet-like high figures were registered in the North Caucasus republics, with a special mention for Chechnya, where allegedly 99.48% of voters backed United Russia, with a turnout of 99.51%, while United Russia support in Dagestan, Ingushetia or Kabardino-Balkaria reached a record high of 90%-91%. These results can be explained – to a great extent – by a system based on authority. North Caucasian leaders rule these republics like their private fiefdoms, especially in Chechnya, where Ramzan Kadyrov has ruled with an iron fist since 2007.

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A Shared Fate: The Political Implications of the Eurozone Crisis

    Tuesday, December 27, 2011   No comments

Jan-Werner Müller

Paul Krugman recently wondered whether it was possible to be “both terrified and bored” by the Eurozone crisis. It is indeed terrifying: the EU—the most important political innovation since the invention of the democratic welfare state—might break apart, or worse. Some are predicting the return of large-scale political violence; protesters on the streets of Athens are already comparing Greece, 2011 to Dachau, 1933. But the crisis is also boring, in that a sad pattern has predictably been repeating itself: markets jitter; politicians declare a make-or-break moment; national leaders host an all-night summit; bleary-eyed, they declare the crisis’s final resolution; the market-confidence fairy makes a brief appearance; and then the cycle starts all over again.
By now most people have settled on one of two economic solutions: either let the European Central Bank act as lender of last resort and issue Eurobonds (everyone’s view, it seems, except the German government’s) or impose discipline so as to avoid inflation and a permanent Southern European Mezzogiorno (the official German view).

Sunday, December 18, 2011

The faith (and doubts) of our fathers: What did the makers of America believe about God and religion? The subject is stirring the very rancour they wanted to avoid

    Sunday, December 18, 2011   No comments

IN THE year of our Lord 1816 two grand old men of the American Revolution corresponded eagerly about the work they had recently done, in their rural retirement, on the Bible. Ex-President Thomas Jefferson thanked his old friend Charles Thomson, a co-sponsor of the Declaration of Independence, for sending a copy of his newly completed synopsis of the Gospels.

At a time when many modern Americans are arguing feverishly over the real significance of the nation's religious and political beginnings, such letters can be dynamite. So let the contents of this exchange be noted carefully. Thomson, like most members of the first American Congress, which he had served as secretary, was a committed member of a church—in his case Presbyterian—but he still felt that there might be things in the Bible that organised Christianity hadn't grasped. So he spent years re-translating the scriptures; the ex-president approved.

But Jefferson, like most of the top figures in the American Revolution, was far more of a sceptic in religious matters. He was fascinated by metaphysics but he had no time for the mystical. In contrast with today's vituperative exchanges, these differences did not stop the two gentlemen maintaining a warm correspondence. But Jefferson's approach to redacting the Bible involved something more radical than translation. He literally snipped out everything supernatural: miracles, the Virgin birth, the resurrection. The result was his own, non-mystical account of the life of Jesus. He told his old comrade: "I too have made a wee little book from the same materials which I call the 'Philosophy of Jesus.' It is a paradigma [sic] of his doctrines, made by cutting the pages out of the book and arranging them on the pages of a blank book…A more beautiful or precious morsel…I have never seen. It is a document in proof that I am a real Christian, that is to say, a disciple of the doctrines of Jesus, very different from the Platonists who call me infidel and themselves Christians."

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